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DNA Ghost:

This note based blog covers bioinformatics and cancer genomics 

March 26, 2018

Ghost wrote a blog regarding tumor CNV calling with matched normalearlier. Here let's talk about what we can do when matched normal is not available. We still use targeted sequencing data where probe efficiency is the major problem.

Tumor CNV calling with panel of...

March 13, 2018

Deep learning has been the hot spot in recent years and shown excellent performance in many applications. In bioinformatics, Google has developed a deep learning based variant caller: DeepVariant ( https://research.googleblog.com/2017/12/deepvariant-high...

March 8, 2018


For people who have tried to build an oncology database or automated pipeline, one of the task is to define a standardized cancer type terminologies. Luckily, some organizations have took efforts to do this, such as OncoTree ( http://oncotree.mskcc.org/oncot...

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