• Home

  • Blog

  • Subscribe

  • Contact

  • Members

  • More

    Use tab to navigate through the menu items.
    • linkedin
     

    DNA Ghost:

    This note based blog covers bioinformatics and cancer genomics 

    Recent Posts

    The power of biological replicates in statistical analysis

    The power of biological replicates in statistical analysis

    MCMC II: Applying MCMC in somatic variant calling

    MCMC II: Applying MCMC in somatic variant calling

    MCMC: Monte Carlo sampling and Markov Chain

    MCMC: Monte Carlo sampling and Markov Chain

    Archive

    • September 2020
    • August 2020
    • July 2020
    • May 2020
    • February 2020
    • January 2020
    • June 2019
    • January 2019
    • December 2018
    • November 2018
    • October 2018
    • June 2018
    • May 2018
    • April 2018
    • March 2018
    • February 2018
    • January 2018
    • December 2017
    • November 2017
    • October 2017
    • September 2017
    • August 2017

    Tags

    • alignment
    • allele frequency
    • BAM
    • batch effect
    • Bayesian
    • Biological replicates
    • chemo therapy
    • CIGAR
    • clonality
    • CNV
    • Cox
    • DESeq
    • duplicates
    • dupRadar
    • FASTQC
    • feature extraction
    • fragment size
    • GWAS
    • Hypothesis testing
    • immune-oncology
    • Immunotherapy
    • insert size
    • Integration site
    • Kaplan -Meier
    • machine learning
    • MCMC
    • neoantigen
    • NextSeq
    • PEAR
    • poly-G
    • Probability distribution
    • QC
    • RNA-Seq
    • SciClone
    • SNP
    • Survival analysis
    • targeted therapy
    • TME
    • Variant calling

    Subscribe

    Calling somatic variants without matched normal

    Calling somatic variants without matched normal

    Identifying somatic mutation has always been challenging. Tumor heterogeneity The major challenge of calling somatic mutation is...
    Variant frequency, effect size and GWAS limitation

    Variant frequency, effect size and GWAS limitation

    Figure below very well explains two important attributes of a variant: population frequency (to avoid confusion, we use "population...
     
     
     

    GET IN TOUCH

    • linkedin

    Your details were sent successfully!

    Address

    New Jersey, USA

    Follow

    • linkedin

    ©2017 by DNA Ghost. Proudly created with Wix.com